A DETAILED REVIEW ON BEGOMOVIRUS BASED ON ITS CLASSIFICATION, ASSOCIATED SATELLITES, PROTEIN FUNCTIONS AND MODE OF ACTION

N AMJAD; I AMJAD; MN KHALID

doi:10.54112/bbasr.v2018i1.12

Authors

N AMJAD Centre of Agricultural Biochemistry and Biotechnology, University of Agriculture Faisalabad, Pakistan
I AMJAD Department of Plant Breeding and Genetics, University of Agriculture Faisalabad, Pakistan
MN KHALID Department of Plant Breeding and Genetics, University of Agriculture Faisalabad, Pakistan

DOI:

https://doi.org/10.54112/bbasr.v2018i1.12

Keywords:

Begomoviruses, satellites, Ageratum conyzoides

Abstract

The largest group of plant viruses is Begomovirus genus. It encompasses round about 100 species. Begomovirus is main genus of family Geminiviridae. Begomoviruses can produce severe infections in several economically important crops all around the world. These are single stranded DNA viruses which are transmitted by Whitefly (Bemisiatabaci). These viruses can cause infection in dicots only. Begomoviruses are divided into two groups. Old world Begomoviruses are existing usually in Asia, America and Europe comprising of monopartite and bipartite genomes and new world Begomoviruses are mostly distributed in the American continent having bipartite genome. There are several DNA satellites which are also associated with Begomoviruses. This review mainly focuses on the classification of the Begomoviruses, origin and evolution of the Begomovirus associated satellites and Begomoviruses proteins functions. This review also sheds light on mode of infection, replication mechanism and Begomovirus-host plant interactions.

References

Akhtar, S., Khan, A. J., Singh, A. S., & Briddon, R. W. (2014). Identification of a disease complex involving a novel monopartite begomovirus with beta-and alphasatellites associated with okra leaf curl disease in Oman. Archives of Virology 159, 1199-1205. DOI: https://doi.org/10.1007/s00705-013-1926-x DOI: https://doi.org/10.1007/s00705-013-1926-x

Amrao, L., Akhter, S., Tahir, M. N., Amin, I., Briddon, R. W., & Mansoor, S. (2010). Cotton leaf curl disease in Sindh province of Pakistan is associated with recombinant begomovirus components. Virus Research 153, 161-165. DOI: https://doi.org/10.1016/j.virusres.2010.07.003 DOI: https://doi.org/10.1016/j.virusres.2010.07.003

Aragão, F. J., & Faria, J. C. (2009). First transgenic geminivirus-resistant plant in the field. Nature Biotechnology 27, 1086-1088. DOI: https://doi.org/10.1038/nbt1209-1086 DOI: https://doi.org/10.1038/nbt1209-1086

Azzam, O. (1994). Whitefly Transmission and Efficient ssDNA Accumulation of Bean Golden Mosaic Geminivirus Require Functional Coat Protein. Virology. 204, 289-296. DOI: https://doi.org/10.1006/viro.1994.1533 DOI: https://doi.org/10.1006/viro.1994.1533

Baliji, S., Black, M. C., French, R., Stenger, D. C., & Sunter, G. (2004). Spinach curly top virus: A newly described Curtovirus species from southwest Texas with incongruent gene phylogenies. Phytopathology 94, 772-779. DOI: https://doi.org/10.1094/PHYTO.2004.94.7.772 DOI: https://doi.org/10.1094/PHYTO.2004.94.7.772

Banik, S., & Sharma, P. (2011). Plant pathology in the era of nanotechnology. Indian Phytopathol 64, 120-127.

Briddon, R., Brown, J., Moriones, E., Stanley, J., Zerbini, M., Zhou, X., & Fauquet, C. (2008). Recommendations for the classification and nomenclature of the DNA-β satellites of begomoviruses. Archives of virology 153, 763-781. DOI: https://doi.org/10.1007/s00705-007-0013-6 DOI: https://doi.org/10.1007/s00705-007-0013-6

Briddon, R. W., Bull, S. E., Amin, I., Idris, A. M., Mansoor, S., Bedford, I. D., Dhawan, P., Rishi, N., Siwatch, S. S., & Abdel-Salam, A. M. (2003). Diversity of DNA β, a satellite molecule associated with some monopartite begomoviruses. Virology 312, 106-121. DOI: https://doi.org/10.1016/S0042-6822(03)00200-9 DOI: https://doi.org/10.1016/S0042-6822(03)00200-9

Briddon, R. W., Patil, B. L., Bagewadi, B., Nawaz-ul-Rehman, M. S., & Fauquet, C. M. (2010). Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC evolutionary biology 10, 1-17. DOI: https://doi.org/10.1186/1471-2148-10-97 DOI: https://doi.org/10.1186/1471-2148-10-97

Brunt, A., Crabtree, K., Dallwitz, M., Gibbs, A., & Watson, L. (1996). Viruses of plants. DOI: https://doi.org/10.1079/9780851987941.0000 DOI: https://doi.org/10.1079/9780851987941.0000

Chellappan, P., Vanitharani, R., Ogbe, F., & Fauquet, C. M. (2005). Effect of temperature on geminivirus-induced RNA silencing in plants. Plant Physiology 138, 1828-1841. DOI: https://doi.org/10.1104/pp.105.066563 DOI: https://doi.org/10.1104/pp.105.066563

Chowda Reddy, R., Colvin, J., Muniyappa, V., & Seal, S. (2005). Diversity and distribution of begomoviruses infecting tomato in India. Archives of virology 150, 845-867. DOI: https://doi.org/10.1007/s00705-004-0486-5 DOI: https://doi.org/10.1007/s00705-004-0486-5

Czosnek, H., Hariton-Shalev, A., Sobol, I., Gorovits, R., & Ghanim, M. (2017). The incredible journey of begomoviruses in their whitefly vector. Viruses 9, 273. DOI: https://doi.org/10.3390/v9100273 DOI: https://doi.org/10.3390/v9100273

Ferro, C., Silva, J., Xavier, C., Godinho, M., Lima, A., Mar, T., Lau, D., & Zerbini, F. (2017). The ever increasing diversity of begomoviruses infecting non‐cultivated hosts: new species from Sida spp. and Leonurus sibiricus, plus two New World alphasatellites. Annals of Applied Biology170, 204-218. DOI: https://doi.org/10.1111/aab.12329 DOI: https://doi.org/10.1111/aab.12329

Fiallo-Olivé, E., Martínez-Zubiaur, Y., Moriones, E., & Navas-Castillo, J. (2012). A novel class of DNA satellites associated with New World begomoviruses. Virology 426, 1-6. DOI: https://doi.org/10.1016/j.virol.2012.01.024 DOI: https://doi.org/10.1016/j.virol.2012.01.024

Frischmuth, T., & Stanley, J. (1998). Recombination between viral DNA and the transgenic coat protein gene of African cassava mosaic geminivirus. J. Gen. Virol.79, 1265-1271. DOI: https://doi.org/10.1099/0022-1317-79-5-1265 DOI: https://doi.org/10.1099/0022-1317-79-5-1265

Godara, S., Paul Khurana, S., & Biswas, K. (2017). Three variants of cotton leaf curl begomoviruses with their satellite molecules are associated with cotton leaf curl disease aggravation in New Delhi. Journal of Plant Biochemistry and Biotechnology 26, 97-105. DOI: https://doi.org/10.1007/s13562-016-0370-x DOI: https://doi.org/10.1007/s13562-016-0370-x

Gutierrez, C. (2000). Geminiviruses and the plant cell cycle. Plant molecular biology 43, 763-772. DOI: https://doi.org/10.1023/A:1006462028363 DOI: https://doi.org/10.1023/A:1006462028363

Heydarnejad, J., Hosseini Abhari, E., Bolok Yazdi, H., & Massumi, H. (2007). Curly top of cultivated plants and weeds and report of a unique curtovirus from Iran. Journal of Phytopathology 155, 321-325. DOI: https://doi.org/10.1111/j.1439-0434.2007.01234.x DOI: https://doi.org/10.1111/j.1439-0434.2007.01234.x

Hull, R. (1989). The movement of viruses in plants. Annual Review of Phytopathology 27, 213-240. DOI: https://doi.org/10.1146/annurev.py.27.090189.001241 DOI: https://doi.org/10.1146/annurev.py.27.090189.001241

Idris, A. M., Shahid, M. S., Briddon, R. W., Khan, A., Zhu, J.-K., & Brown, J. K. (2011). An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation. Journal Of General Virology 92, 706-717. DOI: https://doi.org/10.1099/vir.0.025288-0 DOI: https://doi.org/10.1099/vir.0.025288-0

Krupovic, M., Ravantti, J. J., & Bamford, D. H. (2009). Geminiviruses: a tale of a plasmid becoming a virus. BMC Evolutionary Biology 9, 1-11. DOI: https://doi.org/10.1186/1471-2148-9-112 DOI: https://doi.org/10.1186/1471-2148-9-112

Kumar, R. V., Singh, D., Singh, A. K., & Chakraborty, S. (2017). Molecular diversity, recombination and population structure of alphasatellites associated with begomovirus disease complexes. Infection, Genetics and Evolution 49, 39-47. DOI: https://doi.org/10.1016/j.meegid.2017.01.001 DOI: https://doi.org/10.1016/j.meegid.2017.01.001

Lam, N., Creamer, R., Rascon, J., & Belfon, R. (2009). Characterization of a new curtovirus, pepper yellow dwarf virus, from chile pepper and distribution in weed hosts in New Mexico. Archives of Virology 154, 429-436. DOI: https://doi.org/10.1007/s00705-009-0320-1 DOI: https://doi.org/10.1007/s00705-009-0320-1

Lapidot, M., Weil, G., Cohen, L., Segev, L., & Gaba, V. (2007). Biolistic inoculation of plants with Tomato yellow leaf curl virus DNA. Journal of Virological Methods 144, 143-148. DOI: https://doi.org/10.1016/j.jviromet.2007.04.011 DOI: https://doi.org/10.1016/j.jviromet.2007.04.011

Leke, W. N., Mignouna, D. B., Brown, J. K., & Kvarnheden, A. (2015). Begomovirus disease complex: emerging threat to vegetable production systems of West and Central Africa. Agriculture & Food Security 4, 1-14. DOI: https://doi.org/10.1186/s40066-014-0020-2 DOI: https://doi.org/10.1186/s40066-014-0020-2

Lozano, G., Trenado, H. P., Fiallo-Olivé, E., Chirinos, D., Geraud-Pouey, F., Briddon, R. W., & Navas-Castillo, J. (2016). Characterization of non-coding DNA satellites associated with sweepoviruses (genus Begomovirus, Geminiviridae)–definition of a distinct class of begomovirus-associated satellites. Frontiers in Microbiology 7, 162. DOI: https://doi.org/10.3389/fmicb.2016.00162 DOI: https://doi.org/10.3389/fmicb.2016.00162

Malathi, V., Renukadevi, P., Chakraborty, S., Biswas, K., Roy, A., Sivalingam, P., Venkataravanappa, V., & Mandal, B. (2017). Begomoviruses and their satellites occurring in India: distribution, diversity and pathogenesis. In A century of plant virology in India (pp. 75-177). Springer. DOI: https://doi.org/10.1007/978-981-10-5672-7_5 DOI: https://doi.org/10.1007/978-981-10-5672-7_5

Mansoor, S., Briddon, R. W., Zafar, Y., & Stanley, J. (2003). Geminivirus disease complexes: an emerging threat. Trends in Plant Science 8, 128-134. DOI: https://doi.org/10.1016/S1360-1385(03)00007-4 DOI: https://doi.org/10.1016/S1360-1385(03)00007-4

Marwal, A., Kumar Sahu, A., & Gaur, R. K. (2013). Molecular characterization of begomoviruses and DNA satellites associated with a new host Spanish Flag (Lantana camara) in India. International Scholarly Research Notices 2013. DOI: https://doi.org/10.5402/2013/915703 DOI: https://doi.org/10.5402/2013/915703

Marwal, A., Sahu, A. K., Choudhary, D. K., & Gaur, R. (2013). Complete nucleotide sequence of a begomovirus associated with satellites molecules infecting a new host Tagetes patula in India. Virus Genes 47, 194-198. DOI: https://doi.org/10.1007/s11262-013-0914-2 DOI: https://doi.org/10.1007/s11262-013-0914-2

Morales, F. J. (2006). History and current distribution of begomoviruses in Latin America. Advances in Virus Research 67, 127-162. DOI: https://doi.org/10.1016/S0065-3527(06)67004-8 DOI: https://doi.org/10.1016/S0065-3527(06)67004-8

Mubin, M., Briddon, R., & Mansoor, S. (2009). Complete nucleotide sequence of chili leaf curl virus and its associated satellites naturally infecting potato in Pakistan. Archives of Virology 154, 365-368. DOI: https://doi.org/10.1007/s00705-008-0296-2 DOI: https://doi.org/10.1007/s00705-008-0296-2

Mubin, M., Shahid, M., Tahir, M., Briddon, R., & Mansoor, S. (2010). Characterization of begomovirus components from a weed suggests that begomoviruses may associate with multiple distinct DNA satellites. Virus Genes 40, 452-457. DOI: https://doi.org/10.1007/s11262-010-0470-y DOI: https://doi.org/10.1007/s11262-010-0470-y

Nawaz-ul-Rehman, M. S., Briddon, R. W., & Fauquet, C. M. (2012). A melting pot of Old World begomoviruses and their satellites infecting a collection of Gossypium species in Pakistan. DOI: https://doi.org/10.1371/journal.pone.0040050 DOI: https://doi.org/10.1371/journal.pone.0040050

Nawaz-ul-Rehman, M. S., & Fauquet, C. M. (2009). Evolution of geminiviruses and their satellites. FEBS letters 583, 1825-1832. DOI: https://doi.org/10.1016/j.febslet.2009.05.045 DOI: https://doi.org/10.1016/j.febslet.2009.05.045

Panattoni, A., Luvisi, A., & Triolo, E. (2013). Elimination of viruses in plants: twenty years of progress. Spanish Journal of Agricultural Research, 173-188. DOI: https://doi.org/10.5424/sjar/2013111-3201 DOI: https://doi.org/10.5424/sjar/2013111-3201

Paprotka, T., Metzler, V., & Jeske, H. (2010). The first DNA 1-like α satellites in association with New World begomoviruses in natural infections. Virology 404, 148-157. DOI: https://doi.org/10.1016/j.virol.2010.05.003 DOI: https://doi.org/10.1016/j.virol.2010.05.003

Patil, B. L., & Fauquet, C. M. (2010). Differential interaction between cassava mosaic geminiviruses and geminivirus satellites. Journal of General Virology 91, 1871-1882. DOI: https://doi.org/10.1099/vir.0.019513-0 DOI: https://doi.org/10.1099/vir.0.019513-0

Power, A. G. (2000). Insect transmission of plant viruses: a constraint on virus variability. Current Opinion in Plant Biology 3, 336-340. DOI: https://doi.org/10.1016/S1369-5266(00)00090-X DOI: https://doi.org/10.1016/S1369-5266(00)00090-X

Rigden, J. E., Dry, I. B., Mullineaux, P. M., & Rezaian, M. A. (1993). Mutagenesis of the virion-sense open reading frames of tomato leaf curl geminivirus. Virology 193, 1001-1005. DOI: https://doi.org/10.1006/viro.1993.1215 DOI: https://doi.org/10.1006/viro.1993.1215

Rishishwar, R., Mazumdar, B., & Dasgupta, I. (2015). Diverse and recombinant begomoviruses and various satellites are associated with Bhendi yellow vein mosaic disease of okra in India. Journal of Plant Biochemistry and Biotechnology 24, 470-475. DOI: https://doi.org/10.1007/s13562-015-0305-y DOI: https://doi.org/10.1007/s13562-015-0305-y

Romay, G., Chirinos, D., Geraud-Pouey, F., & Desbiez, C. (2010). Association of an atypical alphasatellite with a bipartite New World begomovirus. Archives of Virology 155, 1843-1847. DOI: https://doi.org/10.1007/s00705-010-0760-7 DOI: https://doi.org/10.1007/s00705-010-0760-7

Rybicki, E. P., & Martin, D. P. (2011). Virus-derived ssDNA vectors for the expression of foreign proteins in plants. Plant Viral Vectors, 19-45. DOI: https://doi.org/10.1007/82_2011_185 DOI: https://doi.org/10.1007/82_2011_185

Schaumberg, K. A., Antunes, M. S., Kassaw, T. K., Xu, W., Zalewski, C. S., Medford, J. I., & Prasad, A. (2016). Quantitative characterization of genetic parts and circuits for plant synthetic biology. Nature Methods 13, 94-100. DOI: https://doi.org/10.1038/nmeth.3659 DOI: https://doi.org/10.1038/nmeth.3659

Shepherd, D. N., Martin, D. P., Van der Walt, E., Dent, K., Varsani, A., & Rybicki, E. P. (2010). Maize streak virus: an old and complex ‘emerging’pathogen. Molecular Plant Pathology 11, 1-12. DOI: https://doi.org/10.1111/j.1364-3703.2009.00568.x DOI: https://doi.org/10.1111/j.1364-3703.2009.00568.x

Soto, M. J., & Gilbertson, R. L. (2003). Distribution and rate of movement of the curtovirus Beet mild curly top virus (family Geminiviridae) in the beet leafhopper. Phytopathology 93, 478-484. DOI: https://doi.org/10.1094/PHYTO.2003.93.4.478 DOI: https://doi.org/10.1094/PHYTO.2003.93.4.478

Venkataravanappa, V., Lakshminarayana Reddy, C., Swaranalatha, P., Jalali, S., Briddon, R. W., & Reddy, M. K. (2011). Diversity and phylogeography of begomovirus-associated beta satellites of okra in India. Virology Journal 8, 1-13. DOI: https://doi.org/10.1186/1743-422X-8-555 DOI: https://doi.org/10.1186/1743-422X-8-555

Xie, Y., Wu, P., Liu, P., Gong, H., & Zhou, X. (2010). Characterization of alphasatellites associated with monopartite begomovirus/betasatellite complexes in Yunnan, China. Virology Journal 7, 1-10. DOI: https://doi.org/10.1186/1743-422X-7-178 DOI: https://doi.org/10.1186/1743-422X-7-178

Young, M., Debbie, W., Uchida, M., & Douglas, T. (2008). Plant viruses as biotemplates for materials and their use in nanotechnology. Annu. Rev. Phytopathol. 46, 361-384. DOI: https://doi.org/10.1146/annurev.phyto.032508.131939 DOI: https://doi.org/10.1146/annurev.phyto.032508.131939

Zhou, X. (2013). Advances in understanding begomovirus satellites. Annual Review of Phytopathology 51, 357-381. DOI: https://doi.org/10.1146/annurev-phyto-082712-102234 DOI: https://doi.org/10.1146/annurev-phyto-082712-102234

Zubair, M., Zaidi, S. S.-e.-A., Shakir, S., Farooq, M., Amin, I., Scheffler, J. A., Scheffler, B. E., & Mansoor, S. (2017). Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton. Scientific Reports 7, 1-11. DOI: https://doi.org/10.1038/s41598-017-00727-2 DOI: https://doi.org/10.1038/s41598-017-00727-2